Preprint published!
We published a preprint on bioRxiv describing our work.
RNABSdb is a collection of all the publicly available high-throughput RNA-DNA interaction data. Considered experimental procedures are ChIRP-seq, CHART-seq, RAP-seq, ChOP-seq, ASO-Caputre-Seq, MARGI-seq, GRID-seq, RADICL-seq and ChAR-seq.
How to cite
If you use data provided by RNABSdb please cite
RNABSdb and 3plex enable deep computational investigation of triplex forming lncRNAs
Chiara Cicconetti, Andrea Lauria, Valentina Proserpio, Annalaura Tamburrini, Mara Maldotti, Salvatore Oliviero, Ivan Molineris
bioRxiv 2022.07.06.496678; doi: https://doi.org/10.1101/2022.07.06.496678
You can find in the experiment table the reference to each original article describing the collected data. Please cite them alongside RNABSdb paper.
Experiments Table
View the list of collected experiments.
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Re-processed data
We reanalyze the data in a standard ad uniform way employing ENCODE ChIP-seq pipeline.
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